English

Sample ID, analyte type, body site where sample was obtained, histological type of sample, inflammation status, tumor status of sample, paucities disease activity index, sequence center, and visit of participants with or without ulcerative colitis and involved in the "Ulcerative Colitis Human Microbiome Project (UCHMP)" project.

5 forms  
pht006262
Description

pht006262

De-identified sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C2346787
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Analyte type [DNA]
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C0443354
UMLS CUI [1,2]
C0332307
Inflammation status
Description

IS_INFLAMED

Data type

text

Alias
UMLS CUI [1,1]
C0021368
UMLS CUI [1,2]
C0243095
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

text

Alias
UMLS CUI [1,1]
C0449475
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0040300
Pouchitis disease activity index
Description

PDAI

Data type

text

Alias
UMLS CUI [1,1]
C3869583
Name of the center which conducted sequencing [MBL]
Description

SEQUENCING_CENTER

Data type

string

Alias
UMLS CUI [1,1]
C1301943
Patient
Description

patient

Data type

text

Alias
UMLS CUI [1,1]
C1269815
Visit
Description

visit

Data type

text

Alias
UMLS CUI [1,1]
C0545082
Tumor status of samples
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0449438
UMLS CUI [1,2]
C0027651
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Similar models

Sample ID, analyte type, body site where sample was obtained, histological type of sample, inflammation status, tumor status of sample, paucities disease activity index, sequence center, and visit of participants with or without ulcerative colitis and involved in the "Ulcerative Colitis Human Microbiome Project (UCHMP)" project.

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006262
SAMPLE_ID
Item
De-identified sample ID
string
C1299222 (UMLS CUI [1,1])
C2346787 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte type [DNA]
string
C0443354 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Item
Inflammation status
text
C0021368 (UMLS CUI [1,1])
C0243095 (UMLS CUI [1,2])
IS_INFLAMED
Code List
Inflammation status
CL Item
No inflammation noted (0)
C1298908 (UMLS CUI [1,1])
C0021368 (UMLS CUI [1,2])
CL Item
Inflammation present (1)
C0021368 (UMLS CUI [1,1])
C0001314 (UMLS CUI [1,2])
CL Item
Post antibiotic treatment (2)
C0205156 (UMLS CUI [1,1])
C0338237 (UMLS CUI [1,2])
Item
Cell or tissue type or subtype of sample
text
C0449475 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0040300 (UMLS CUI [1,3])
HISTOLOGICAL_TYPE
Code List
Cell or tissue type or subtype of sample
CL Item
Biopsy (BI)
C0005558 (UMLS CUI [1,1])
CL Item
Brush (BR)
C0009417 (UMLS CUI [1,1])
C0441631 (UMLS CUI [1,2])
CL Item
luminal aspirate (LU)
C0370199 (UMLS CUI [1,1])
Item
Pouchitis disease activity index
text
C3869583 (UMLS CUI [1,1])
PDAI
Code List
Pouchitis disease activity index
CL Item
Not available (9999)
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing [MBL]
string
C1301943 (UMLS CUI [1,1])
patient
Item
Patient
text
C1269815 (UMLS CUI [1,1])
visit
Item
Visit
text
C0545082 (UMLS CUI [1,1])
Item
Tumor status of samples
text
C0449438 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
IS_TUMOR
Code List
Tumor status of samples
CL Item
Not a tumor (N)
C1298908 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
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