ID

35290

Beskrivning

OMOP Common Data Model (CDM) Specimen The specimen domain contains the records identifying biological samples from a person. OMOP Common Data Model Version 6.0 Specifications 11October2018. The Observational Medical Outcomes Partnership (OMOP) was a public-private partnership established to inform the appropriate use of observational healthcare databases for studying the effects of medical products. © 2014 Observational Health Data Sciences and Informatics This work is based on work by the Observational Medical Outcomes Partnership (OMOP) and used under license from the FNIH at http://omop.fnih.org/publiclicense. Version updated on 26.02.2019, from https://github.com/OHDSI/CommonDataModel/wiki/SPECIMEN

Länk

http://omop.fnih.org/publiclicense

Nyckelord

Versioner (3)
  1. 2017-01-04 2017-01-04 -
  2. 2019-02-18 2019-02-18 -
  3. 2019-02-26 2019-02-26 -
Rättsinnehavare

Observational Medical Outcomes Partnership (OMOP)

Uppladdad den

26 februari 2019

DOI

För en begäran logga in.

Licens

Creative Commons BY-NC 3.0
Modellkommentarer :

Här kan du kommentera modellen. Med hjälp av pratbubblor i Item-grupperna och Item kan du lägga in specifika kommentarer.

Tillbaka till modellkommentarer
Itemgroup-kommentar för :

Item-kommentar för :

Du måste vara inloggad för att kunna ladda ner formulär. Var vänlig logga in eller registrera dig utan kostnad.

OMOP Common Data Model (CDM) Specimen

Engelsk

OMOP Common Data Model (CDM) Specimen

1 Formulär  
Specimen
Beskrivning

Specimen

Alias
UMLS CUI-1
C0370003
Specimen ID
Beskrivning

A unique identifier for each specimen.

Datatyp

integer

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C1300638
Person ID
Beskrivning

A foreign key identifier to the person for whom the specimen is recorded.

Datatyp

integer

Alias
UMLS CUI [1]
C2348585
Specimen concept ID
Beskrivning

A foreign key referring to a standard concept identifier in the Standardized Vocabularies for the specimen.

Datatyp

integer

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Specimen type concept ID
Beskrivning

A foreign key referring to the Concept identifier in the Standardized Vocabularies reflecting the system of record from which the Specimen was represented in the source data.

Datatyp

integer

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Specimen date
Beskrivning

The date the specimen was obtained from the person.

Datatyp

date

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0011008
Specimen datetime
Beskrivning

The date and time on the date when the specimen was obtained from the person.

Datatyp

datetime

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0040223
Specimen quantity
Beskrivning

The amount of specimen collection from the person during the sampling procedure

Datatyp

float

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C1265611
Unit concept ID
Beskrivning

A foreign key to a standard concept identifier for the unit associated with the numeric quantity of the specimen collection.

Datatyp

integer

Alias
UMLS CUI [1,1]
C1519795
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Anatomic site concept ID
Beskrivning

A foreign key to a standard concept identifier for the anatomic location of specimen collection. Anatomic site is coded at the most specific level of granularity possible, such that higher level classifications can be derived using the Standardized Vocabularies.

Datatyp

integer

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Disease status concept ID
Beskrivning

A foreign key to a standard concept identifier for the disease status of specimen collection.

Datatyp

integer

Alias
UMLS CUI [1,1]
C0012634
UMLS CUI [1,2]
C0449438
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Specimen source ID
Beskrivning

The Specimen identifier as it appears in the source data. (Type varchar(50))

Datatyp

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C1300638
Specimen source value
Beskrivning

The specimen value as it appears in the source data. This value is mapped to a standard concept in the Standardized Vocabularies and the original code is stored here for reference. (Type varchar(50))

Datatyp

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
UMLS CUI [1,4]
C0600091
Unit source value
Beskrivning

The information about the unit as detailed in the source. (Type varchar(50))

Datatyp

text

Alias
UMLS CUI [1,1]
C1519795
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
Anatomic site source value
Beskrivning

The information about the anatomic site as detailed in the source. Anatomic site is coded at the most specific level of granularity possible, such that higher level classifications can be derived using the Standardized Vocabularies. (Type varchar(50))

Datatyp

text

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
Disease status source value
Beskrivning

The information about the disease status as detailed in the source. (Type varchar(50))

Datatyp

text

Alias
UMLS CUI [1,1]
C0012634
UMLS CUI [1,2]
C0449438
UMLS CUI [1,3]
C0449416
UMLS CUI [1,4]
C0805701
Tillbaka till toppen

Similar models

OMOP Common Data Model (CDM) Specimen

1 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
Specimen
C0370003 (UMLS CUI-1)
Specimen ID
Item
Specimen ID
integer
C0370003 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Person ID
Item
Person ID
integer
C2348585 (UMLS CUI [1])
Specimen concept ID
Item
Specimen concept ID
integer
C0370003 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Specimen type concept ID
Item
Specimen type concept ID
integer
C0370003 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Specimen date
Item
Specimen date
date
C0370003 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Specimen datetime
Item
Specimen datetime
datetime
C0370003 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0040223 (UMLS CUI [1,3])
Specimen quantity
Item
Specimen quantity
float
C0370003 (UMLS CUI [1,1])
C1265611 (UMLS CUI [1,2])
Unit concept ID
Item
Unit concept ID
integer
C1519795 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Anatomic site concept ID
Item
Anatomic site concept ID
integer
C1515974 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Disease status concept ID
Item
Disease status concept ID
integer
C0012634 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Specimen source ID
Item
Specimen source ID
text
C0370003 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Specimen source value
Item
Specimen source value
text
C0370003 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
C0600091 (UMLS CUI [1,4])
Unit source value
Item
Unit source value
text
C1519795 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
Anatomic site source value
Item
Anatomic site source value
text
C1515974 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
Disease status source value
Item
Disease status source value
text
C0012634 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
C0805701 (UMLS CUI [1,4])
Tillbaka till toppen 

Kontakt

Använd detta formulär för feedback, frågor och förslag på förbättringar.

Fält markerade med * är obligatoriska.

Hjälp

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial